Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs72632814 chr1:227478897 G/A 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs72632817 chr1:227485797 T/A 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs72637065 chr10:62506990 T/C 2.59E-6 118 38.83 47.73 25.83 KM Plot
THYM rs72639754 chr4:70086280 C/T 6.0E-13 118 41.22 35 6 KM Plot
THYM rs72647308 chr4:187135129 G/A 1.1E-8 119 42.82 36.63 12.63 KM Plot
THYM rs7265045 chr20:52352110 A/G 0.000137 119 42.33 39.4 28.43 KM Plot
THYM rs72704493 chr5:1853289 G/A 2.18E-5 114 44.38 35.67 28.43 KM Plot
THYM rs72727720 chr15:42339738 G/A 0.000141 118 41.77 46.15 28.43 KM Plot
THYM rs72727721 chr15:42339775 G/A 0.000141 118 41.77 46.15 28.43 KM Plot
THYM rs72727723 chr15:42339820 T/C 0.000141 118 41.77 46.15 28.43 KM Plot
THYM rs72729637 chr4:154239527 A/G 7.8E-13 117 41.22 47.97 6 KM Plot
THYM rs72745424 chr1:210534393 T/C 0.000301 118 46.6 35 NA KM Plot
THYM rs72745429 chr1:210540205 A/G 0.00015 116 46.6 32.7 NA KM Plot
THYM rs72756383 chr9:98517770 T/G 3.35E-9 119 40.67 42.73 34.87 KM Plot
THYM rs7275722 chr21:45465679 C/T 0.000118 118 38.33 50.65 28.43 KM Plot